CIGESMED’s Protocols

Protocols Index
Protocol 1: "Profiles characterisation"
Protocol 2: "Inter-calibration"NOT YET OPEN TO VALIDATION
Protocol 3: "Characterization by photo-quadrats"
Protocol 4: "Sample collection for metabarcoding"NOT YET OPEN TO VALIDATION
Protocol 5: "Sampling protocol for population genetics"
Protocol 6: "Citizen science"
How to cite this content:

David R., Arvanitidis C., Çinar M.E., Dubar J., Dubois S., Erga Z., Guillemain D., Sartoretto S., Thierry de Ville d’Avray L., Zuberer F., Chenuil A., Féral J.-P., (2014), with contributors : Açik Çinar S., Andral B., Aurelle D., Aysel V., Bakir K., Bellan G., Bellan-Santini D., Bouchoucha M., Celik C., Chatzigeorgiou G., Chatzinikolaou E., Chenesseau S., Dağli E., Dailianis T., Dimitriadis C., D’Iribarne C., Doğan A., Dounas C., Egea E., Elguerrabi W., Emery E., Evcen A., Faulwetter S., Gatti G., Gerovasileiou V., Güçver S.M., Issaris Y., Katağan T., Keklikoglou K., Kirkim F., Koçak F., Koutsoubas D., Marschal C., Önen M., Önen S., Öztürk B., Panayiotidis P., Pavloudi C., Pergent G., Pergent-Martini C., Poursanidis D., Ravel C., Reizopoulou S., Rocher C., Ruiton S., Sakher S., Salomidi M., Sarropoulou E., Selva M., Sini M., Sourbes L., Simboura N., Taşkin E., Vacelet J., Valavanis V., Vasileiadou A., Verlaque M. Protocols for monitoring of coralligenous habitats of mediterannean (Coralligenous based Indicators to Evaluate and Monitor the "good ecological status" of the MEDiterranean coastal waters) Protocoles de suivi du coralligène en méditerranée (Coralligenous
based Indicators to Evaluate and Monitor the "good ecological status" of the MEDiterranean coastal waters).

Reminders on the concepts of coralligenous facies
[§ 1] Coralligenous habitats, considered as underwater landscapes or as ecological puzzles (UNEP? – MAP – RAC/SPA?, 2009), have a very complex structure that allow the development of several community types (Laborel, 1961; Laubier, 1966; Hong, 1982; Laborel, 1987 ; Ballesteros, 2006).

[§ 2] The description of these facies according to the appearance of different biocenosis? is influenced by the predominance of one or more notable species (gorgonians, sponges, erect bryozoans…) favoured by the local preponderance of certain physico-chemical and geomorphological factors (current, fine particules input, light and depth, rugosity, slope and orientation).

[§ 3] The description of these facies based on their bionomic appearance only remains difficult, and their distribution is very related to surrounding micro-conditions (Virgilio et al., 2006),mainly natural light and currents, that influence the occurrence and the location of various ecotons? and enclaves.

[§ 4] Establish a precise typology and standardize the description of coralligenous facies encountered in the different regions studied under CIGESMED is essential. This approach will be intended through the creation of ontology for this type of habitat?.
Some facies recognized as coralligenous habitats observed in Marseilles region, are represented in Figure 1.

[§ 5] If we focus on sciaphilic? communities with basal concretions made of coralline algae (Lithophyllum and Mesophyllum) from the infralittoral? and circalittoral? zones, a multitude of remarkable facies are cited in literature:

1) "Pre-coralligenous" facies characterized by the presence of hemiphotophilic algae such as: Udotea petiolata ((Turra) Borgesen, 1926) and Halimeda tuna ((J.Ellis & Solander) J.V.Lamouroux, 1816). This facies has been described by several authors (e.g. Pérès & Picard, 1964; Gili & Ros, 1985; Ros et al., 1985; Gori et al., 2011).
2) Facies characterized by Eunicella singularis (Esper, 1791).
3) Facies characterized by Eunicella cavolini (Koch, 1887).
4) Facies characterized by Peyssonnelia squamaria ((S.G.Gmelin) Decaisne, 1842).
5) Facies characterized by Pseudolithophyllum cabiochiae rims.
6) Facies characterized by Lithophyllum incrustans (R.A.Philippi, 1837).
7) Facies characterized by Mesophyllum alternans ((Foslie) Cabioch & Mendoza 1998).
8) Facies characterized by Paramuricea clavata (Risso, 1826).
9) Facies characterized by Myriapora truncata (Pallas, 1766).
10) Facies characterized by Corallium rubrum (Linnaeus, 1758).

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Fig.1: example of remarkable facies of coralligenous habitats observed in Marseilles’ region (© Zuberer F.)

[§ 6] The SPN (service of natural heritage of the French national Museum of natural history) listed Mediterranean biocenosis in a more completed way, in which we can find these facies of coralligenous environment:

IV.3.1. Coralligenous biocenosis (C)
IV.3.1.a. Association? of Cystoseira zosteroides (Syn. C. opuntioides)
IV.3.1.b. Association of Sargassum spp.
IV.3.1.c. Association of Laminaria rodriguezii on rocks
IV.3.1.d. Association of Flabellia petiolata and Peyssonnelia squamaria
IV.3.1.e. Association of Halymenia floresia and Halarachnion ligulatum
IV.3.1.f. Association of Rodriguezella spp.
IV.3.1.g. Association of Lithophyllum spp. and Mesophyllum spp.
IV.3.1.h. Facies of Eunicella cavolini
IV.3.1.i. Facies of Eunicella singularis / Eunicella verrucosa
IV.3.1.j. Facies of Leptogorgia sarmentosa
IV.3.1.k. Facies of Paramuricea clavata
IV.3.1.l. Facies of Parazoanthus axinellae
IV.3.2. Biocenosis of coralligenous shelf

MNHN - Service du Patrimoine Naturel (SPN):Typologie des biocénoses benthiques de Méditerranée
Liste de référence française et correspondances

[§ 7] Within the context of CIGESMED, we will consider mainly the biocenosis present in the studied regions and represented in the most typical and common profiles (if they are not enough common, sampling could be avoided) (IV.3.1.d., IV.3.1.g., IV.3.1.h., IV.3.1.i., IV.3.1.k., IV.3.1.l. in bold in the list above). Moreover, other profiles sheltering remarkable species will be taken in account independently (Corallium rubrum, Leptosammia spp.) See examples in Figure 2.

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Figure 2: examples of facies of (1) Udotea peteolata and Halimeda tuna, (2) Eunicella singularis, (3) Eunicella cavolini, (4) Peyssonnelia squamaria, (5) Mesophyllum alternans, (6) Corallium rubrum, (7) Myriapora truncata (Pallas, 1766) and (8) Paramuricea clavata (© Zuberer F.)

Protocols Index
Protocol 1: "Profile’s characterisation"
Protocol 2: "Inter-calibration"NOT YET OPEN TO VALIDATION
Protocol 3: "Characterization by photo-quadrats"NOT YET OPEN TO VALIDATION
Protocol 4: "Sample collection for metabarcoding"NOT YET OPEN TO VALIDATION
Protocol 5: "Sampling protocol for population genetics"
Protocol 6: "Citizen science"

WE EXPECT YOUR SUGGESTIONS OF CORRECTIONS!

- Deadline: 14th December 2015
- Please add comments for each paragraph (§) by means of a corrected new version (one form per §)
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